All kinds of issues inslalling basemap under Ubuntu 8.10 64bit [SEC=UNCLASSIFIED]

Re: [Matplotlib-users] All kinds of issues inslalling basemap under Ubuntu 8.10 64bit [SEC=UNCLASSIFIED]
Thanks Jeff or all your help (and Scott too… and all the people that have posted to this list over the years… it is an amazing source of information… A great example of why open source works so well for those in the scientific community)

Jeff’s libgeos mod worked… after some massaging…

I needed to put #include in:

…/source/io/StringTokenizer.cpp

…/source/io/ByteOrderValues.cpp

…/source/capi/geos_c.cpp (and #include must be retained)

…/source/io/markup/MarkupSTL.cpp (also inserted #include )

…/source/io/markup/MarkupSTL.h

libgeos then compiled and I was able install basemap (tested by running the garp.py example…)

fingers crossed the rest of my code works… As noted it seems to be an issue with gcc4.3 requiring more explicit coding…

Dr Scott Collis

Postdoctoral Researcher

Centre for Australian Weather and Climate Research (CAWCR)

Atmosphere and Land Observation and Assessment Group

Australian Bureau of Meteorology Room 9.57 Level 9 700 Collins Street Docklands 3008

Office: (03) 9669 4766

MB: 0412177550

http://www.bom.gov.au/bmrc/wefor/staff/scollis/

···

From: Jeff Whitaker [mailto:jswhit@…1836…46…]
Sent: Thu 8/01/2009 3:16 AM
To: Scott Collis
Cc: matplotlib-users@lists.sourceforge.net
Subject: Re: [Matplotlib-users] All kinds of issues inslalling basemap under Ubuntu 8.10 64bit [SEC=UNCLASSIFIED]

Scott Collis wrote:

Greetings…
I have been using basemap extensively to do presentation graphics
under quite a wide variety of platforms but I got a new 64bit dual
core laptop recently and have been having all kinds of problems
installing it…
I am using (K)ubuntu 8.10 and have tried to install it two ways…
This is a 64bit system
(1) using the pre-compiles libgeos 3.0.0:
this is installed using the libgeos-dev package under ubuntu
The package (seems) to install ok
I then grab the latest source and do the usual python setup.py build jobbo
and get a massive raft of errors eg:

src/_proj.c:2353: error: ‘__pyx_kp_4’ undeclared here (not in a function)
src/_proj.c:2353: warning: excess elements in struct initializer
src/_proj.c:2353: warning: (near initialization for
‘__pyx_string_tab[19]’)
src/_proj.c:2353: warning: excess elements in struct initializer
src/_proj.c:2353: warning: (near initialization for
‘__pyx_string_tab[19]’)
src/_proj.c:2353: warning: excess elements in struct initializer


src/_proj.c:3155: error: expected ‘)’ before ‘’ token
src/_proj.c:3170: error: expected ‘)’ before ‘
’ token
src/_proj.c:3185: error: expected ‘)’ before ‘’ token
src/_proj.c:3200: error: expected ‘)’ before ‘
’ token
src/_proj.c:3215: error: expected ‘)’ before ‘’ token
src/_proj.c:3230: error: expected ‘)’ before ‘
’ token
error: Command “gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv
-O2 -Wall -Wstrict-prototypes -fPIC -Isrc
-I/usr/lib/python2.5/site-packages/numpy/core/include
-I/usr/include/python2.5 -c src/_proj.c -o
build/temp.linux-x86_64-2.5/src/_proj.o” failed with exit status 1
(2) building libgeos from source…
I get the same error for 2.2.3 (a version I have had no problems
compiling on centos5 64bit machines in the past) and 3.0.0
make[3]: Entering directory
/home/scollis/geos-3.0.0/source/index/quadtree' if /bin/bash ../../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I../../../source/headers -I../../../source/headers/geos -I../../../source/headers -g -O2 -DGEOS_INLINE -Wall -ansi -pedantic -Wno-long-long -MT DoubleBits.lo -MD -MP -MF ".deps/DoubleBits.Tpo" -c -o DoubleBits.lo DoubleBits.cpp; \ then mv -f ".deps/DoubleBits.Tpo" ".deps/DoubleBits.Plo"; else rm -f ".deps/DoubleBits.Tpo"; exit 1; fi g++ -DHAVE_CONFIG_H -I. -I. -I../../../source/headers -I../../../source/headers/geos -I../../../source/headers -g -O2 -DGEOS_INLINE -Wall -ansi -pedantic -Wno-long-long -MT DoubleBits.lo -MD -MP -MF .deps/DoubleBits.Tpo -c DoubleBits.cpp -fPIC -DPIC -o .libs/DoubleBits.o DoubleBits.cpp: In static member function 'static double geos::index::quadtree::DoubleBits::powerOf2(int)': DoubleBits.cpp:51: error: 'memcpy' was not declared in this scope DoubleBits.cpp: In constructor 'geos::index::quadtree::DoubleBits::DoubleBits(double)': DoubleBits.cpp:94: error: 'memcpy' was not declared in this scope make[3]: *** [DoubleBits.lo] Error 1 make[3]: Leaving directory/home/scollis/geos-3.0.0/source/index/quadtree’
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory /home/scollis/geos-3.0.0/source/index' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory/home/scollis/geos-3.0.0/source’
make: *** [all-recursive] Error 1
ANY help very very very welcome! I am some what at a loss as I have
managed to compile both libgeos and basemap under much more “user
unfriendly” distros before…

Scott: Could you try this modification to DoubleBits.cpp and let me know
if it fixes the geos-2.2.3 compilation? I think you must be using gcc
4.3, which is much pickier than earlier versions about such things.

Index: source/index/quadtree/DoubleBits.cpp

— source/index/quadtree/DoubleBits.cpp (revision 6729)
+++ source/index/quadtree/DoubleBits.cpp (working copy)
@@ -15,6 +15,7 @@

#include <geos/indexQuadtree.h>
#include <geos/util.h>
+#include
#include

Thanks,

-Jeff

Dr Scott Collis
Postdoctoral Researcher
Centre for Australian Weather and Climate Research (CAWCR)
Atmosphere and Land Observation and Assessment Group
Australian Bureau of Meteorology Room 9.57 Level 9 700 Collins Street
Docklands 3008
Office: (03) 9669 4766
MB: 0412177550
http://www.bom.gov.au/bmrc/wefor/staff/scollis/


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