step-by-step to installling from source using conda?

Hi all,

I?m somewhat stymied trying to understand how to install matplotlib in
a development environment using conda.

I have MacOS, and I have brew gcc etc. I know how to set up a env in
conda.

I eventually want to be able to run the tests, so that I can stop
uploading things with PEP8 errors etc.

Sorry if this is too vague. I can start over again and send specific
errors if that is easier, but I would bet someone has a step-by-step.

Thanks, Jody
-------------- next part --------------
An HTML attachment was scrubbed...
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This should be pretty straightforward, but MPL's dependencie are pretty
complex. IN thoery, simplyL

1) create an environment
2) install the dev dependencies
3) build away.

but in fact, step (2) there is not so straightforward, so here we go...

1) I recommend using conda-forge as a source of packages -- it is more up
to date than defaults, and you are developing....

conda config --add channels conda-forge

2) create an environment for doing your development:

conda create -n mpl-dev python=3

3) activate that environment:

source activate mpl-dev

4) install the requirements of mpl:

OK -- this one is kinda messy for MPL. It has a lot of requirements that
depend someone on which sub-packages you are going to build.

but first you need pk-config, which MPL used to find/configure stuff on
*nix systems.

(you may have this from Brew already)

conda install pkg-config

python setup.py --requires doesn't work, as mpl does a lot of ative
configuration.

but:

python ./setup.py dry-run

will get you a good list:

REQUIRED DEPENDENCIES AND EXTENSIONS
                 numpy: yes [not found. pip may install it below.]
                   six: yes [six was not found.pip will attempt to install
                        it after matplotlib.]
              dateutil: yes [dateutil was not found. It is required for date
                        axis support. pip/easy_install may attempt to
                        install it after matplotlib.]
backports.functools_lru_cache: yes [Not required]
          subprocess32: yes [Not required]
                  pytz: yes [pytz was not found. pip/easy_install may
                        attempt to install it after matplotlib.]
                cycler: yes [cycler was not found. pip/easy_install may
                        attempt to install it after matplotlib.]
               tornado: yes [tornado was not found. It is required for the
                        WebAgg backend. pip/easy_install may attempt to
                        install it after matplotlib.]
             pyparsing: yes [pyparsing was not found. It is required for
                        mathtext support. pip/easy_install may attempt to
                        install it after matplotlib.]
                libagg: yes [pkg-config information for 'libagg' could not
                        be found. Using local copy.]
              freetype: no [The C/C++ header for freetype2 (ft2build.h)
                        could not be found. You may need to install the
                        development package.]
                   png: yes [version 1.6.26]
                 qhull: yes [pkg-config information for 'libqhull' could not
                        be found. Using local copy.]

you don't want pip to try to install anything, so I created a requirements
file (enclosed)

conda install --file conda_requirements_dev.txt

And now you should be able to build!

python setup.py build

Note that you won't get all the back-ends -- other dependencies need to be
installed for that.

BTW: it would be nice to have something like that conda_requirements_dev.txt
in the MPL repo -- the setup-tools stuff is way to tied into the
build/packaging/installing system.

HTH,

-CHB

···

On Tue, Jun 13, 2017 at 6:24 AM, Jody Klymak <jklymak at gmail.com> wrote:

Hi all,

I?m somewhat stymied trying to understand how to install matplotlib in a
development environment using conda.

I have MacOS, and I have brew gcc etc. I know how to set up a env in conda.

I eventually want to be able to run the tests, so that I can stop
uploading things with PEP8 errors etc.

Sorry if this is too vague. I can start over again and send specific
errors if that is easier, but I would bet someone has a step-by-step.

Thanks, Jody

_______________________________________________
Matplotlib-devel mailing list
Matplotlib-devel at python.org
Matplotlib-devel Info Page

--

Christopher Barker, Ph.D.
Oceanographer

Emergency Response Division
NOAA/NOS/OR&R (206) 526-6959 voice
7600 Sand Point Way NE (206) 526-6329 fax
Seattle, WA 98115 (206) 526-6317 main reception

Chris.Barker at noaa.gov
-------------- next part --------------
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-------------- next part --------------
pkg-config
numpy
six
freetype
libpng # want the conda version

# run-time deps
# may be needed if you want to test stuff.
python-dateutil
pytz
cycler
tornado
pyparsing

Hi Chris. Thanks so much. That'll be useful

I think I was partially tricked by the fact that %matplotlib notebook wasn't working for master in a Jupiter notebook. but I see now that it doesn't wrk for anyone so I guess I was installing things adequately :wink:

Thanks again. Jody

···

Sent from my iPhone

On Aug 5, 2017, at 14:22, Chris Barker <chris.barker at noaa.gov> wrote:

This should be pretty straightforward, but MPL's dependencie are pretty complex. IN thoery, simplyL

1) create an environment
2) install the dev dependencies
3) build away.

but in fact, step (2) there is not so straightforward, so here we go...

1) I recommend using conda-forge as a source of packages -- it is more up to date than defaults, and you are developing....

conda config --add channels conda-forge

2) create an environment for doing your development:

conda create -n mpl-dev python=3

3) activate that environment:

source activate mpl-dev

4) install the requirements of mpl:

OK -- this one is kinda messy for MPL. It has a lot of requirements that depend someone on which sub-packages you are going to build.

but first you need pk-config, which MPL used to find/configure stuff on *nix systems.

(you may have this from Brew already)

conda install pkg-config

python setup.py --requires doesn't work, as mpl does a lot of ative configuration.

but:

python ./setup.py dry-run

will get you a good list:

REQUIRED DEPENDENCIES AND EXTENSIONS
                 numpy: yes [not found. pip may install it below.]
                   six: yes [six was not found.pip will attempt to install
                        it after matplotlib.]
              dateutil: yes [dateutil was not found. It is required for date
                        axis support. pip/easy_install may attempt to
                        install it after matplotlib.]
backports.functools_lru_cache: yes [Not required]
          subprocess32: yes [Not required]
                  pytz: yes [pytz was not found. pip/easy_install may
                        attempt to install it after matplotlib.]
                cycler: yes [cycler was not found. pip/easy_install may
                        attempt to install it after matplotlib.]
               tornado: yes [tornado was not found. It is required for the
                        WebAgg backend. pip/easy_install may attempt to
                        install it after matplotlib.]
             pyparsing: yes [pyparsing was not found. It is required for
                        mathtext support. pip/easy_install may attempt to
                        install it after matplotlib.]
                libagg: yes [pkg-config information for 'libagg' could not
                        be found. Using local copy.]
              freetype: no [The C/C++ header for freetype2 (ft2build.h)
                        could not be found. You may need to install the
                        development package.]
                   png: yes [version 1.6.26]
                 qhull: yes [pkg-config information for 'libqhull' could not
                        be found. Using local copy.]

you don't want pip to try to install anything, so I created a requirements file (enclosed)

conda install --file conda_requirements_dev.txt

And now you should be able to build!

python setup.py build

Note that you won't get all the back-ends -- other dependencies need to be installed for that.

BTW: it would be nice to have something like that conda_requirements_dev.txt in the MPL repo -- the setup-tools stuff is way to tied into the build/packaging/installing system.

HTH,

-CHB

On Tue, Jun 13, 2017 at 6:24 AM, Jody Klymak <jklymak at gmail.com> wrote:

Hi all,

I?m somewhat stymied trying to understand how to install matplotlib in a development environment using conda.

I have MacOS, and I have brew gcc etc. I know how to set up a env in conda.

I eventually want to be able to run the tests, so that I can stop uploading things with PEP8 errors etc.

Sorry if this is too vague. I can start over again and send specific errors if that is easier, but I would bet someone has a step-by-step.

Thanks, Jody

_______________________________________________
Matplotlib-devel mailing list
Matplotlib-devel at python.org
Matplotlib-devel Info Page

--

Christopher Barker, Ph.D.
Oceanographer

Emergency Response Division
NOAA/NOS/OR&R (206) 526-6959 voice
7600 Sand Point Way NE (206) 526-6329 fax
Seattle, WA 98115 (206) 526-6317 main reception

Chris.Barker at noaa.gov
<conda_requirements_dev.txt>
_______________________________________________
Matplotlib-devel mailing list
Matplotlib-devel at python.org
Matplotlib-devel Info Page

-------------- next part --------------
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I sometimes take a blunter approach, install Matplotlib via conda and then
uninstall it which leaves behind the dependencies :wink:

Tom

···

On Sat, Aug 5, 2017 at 5:33 PM Klymak Jody <jklymak at uvic.ca> wrote:

Hi Chris. Thanks so much. That'll be useful

I think I was partially tricked by the fact that %matplotlib notebook
wasn't working for master in a Jupiter notebook. but I see now that it
doesn't wrk for anyone so I guess I was installing things adequately :wink:

Thanks again. Jody

Sent from my iPhone

On Aug 5, 2017, at 14:22, Chris Barker <chris.barker at noaa.gov> wrote:

This should be pretty straightforward, but MPL's dependencie are pretty
complex. IN thoery, simplyL

1) create an environment
2) install the dev dependencies
3) build away.

but in fact, step (2) there is not so straightforward, so here we go...

1) I recommend using conda-forge as a source of packages -- it is more up
to date than defaults, and you are developing....

conda config --add channels conda-forge

2) create an environment for doing your development:

conda create -n mpl-dev python=3

3) activate that environment:

source activate mpl-dev

4) install the requirements of mpl:

OK -- this one is kinda messy for MPL. It has a lot of requirements that
depend someone on which sub-packages you are going to build.

but first you need pk-config, which MPL used to find/configure stuff on
*nix systems.

(you may have this from Brew already)

conda install pkg-config

python setup.py --requires doesn't work, as mpl does a lot of ative
configuration.

but:

python ./setup.py dry-run

will get you a good list:

REQUIRED DEPENDENCIES AND EXTENSIONS
                 numpy: yes [not found. pip may install it below.]
                   six: yes [six was not found.pip will attempt to install
                        it after matplotlib.]
              dateutil: yes [dateutil was not found. It is required for
date
                        axis support. pip/easy_install may attempt to
                        install it after matplotlib.]
backports.functools_lru_cache: yes [Not required]
          subprocess32: yes [Not required]
                  pytz: yes [pytz was not found. pip/easy_install may
                        attempt to install it after matplotlib.]
                cycler: yes [cycler was not found. pip/easy_install may
                        attempt to install it after matplotlib.]
               tornado: yes [tornado was not found. It is required for the
                        WebAgg backend. pip/easy_install may attempt to
                        install it after matplotlib.]
             pyparsing: yes [pyparsing was not found. It is required for
                        mathtext support. pip/easy_install may attempt to
                        install it after matplotlib.]
                libagg: yes [pkg-config information for 'libagg' could not
                        be found. Using local copy.]
              freetype: no [The C/C++ header for freetype2 (ft2build.h)
                        could not be found. You may need to install the
                        development package.]
                   png: yes [version 1.6.26]
                 qhull: yes [pkg-config information for 'libqhull' could
not
                        be found. Using local copy.]

you don't want pip to try to install anything, so I created a requirements
file (enclosed)

conda install --file conda_requirements_dev.txt

And now you should be able to build!

python setup.py build

Note that you won't get all the back-ends -- other dependencies need to be
installed for that.

BTW: it would be nice to have something like that
conda_requirements_dev.txt in the MPL repo -- the setup-tools stuff is
way to tied into the build/packaging/installing system.

HTH,

-CHB

On Tue, Jun 13, 2017 at 6:24 AM, Jody Klymak <jklymak at gmail.com> wrote:

Hi all,

I?m somewhat stymied trying to understand how to install matplotlib in a
development environment using conda.

I have MacOS, and I have brew gcc etc. I know how to set up a env in
conda.

I eventually want to be able to run the tests, so that I can stop
uploading things with PEP8 errors etc.

Sorry if this is too vague. I can start over again and send specific
errors if that is easier, but I would bet someone has a step-by-step.

Thanks, Jody

_______________________________________________
Matplotlib-devel mailing list
Matplotlib-devel at python.org
Matplotlib-devel Info Page

--

Christopher Barker, Ph.D.
Oceanographer

Emergency Response Division
NOAA/NOS/OR&R (206) 526-6959 voice
7600 Sand Point Way NE (206) 526-6329 fax
Seattle, WA 98115 (206) 526-6317 main reception

Chris.Barker at noaa.gov

<conda_requirements_dev.txt>

_______________________________________________
Matplotlib-devel mailing list
Matplotlib-devel at python.org
Matplotlib-devel Info Page

_______________________________________________
Matplotlib-devel mailing list
Matplotlib-devel at python.org
Matplotlib-devel Info Page

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That's what I do, also. For the installation from source I now use
either "pip install ." or "pip install -e .". Depending on how much I
am changing (e.g., switching from maintenance to master, or back), I do
"pip uninstall matplotlib" and "git clean -dfx" (only with all desired
changes committed, of course) to clean out the old version before
installing the new.

At least on a Mac, there can still be some bogus test failures.

Eric

···

On 2017/08/05 1:27 PM, Thomas Caswell wrote:

I sometimes take a blunter approach, install Matplotlib via conda and
then uninstall it which leaves behind the dependencies :wink:

Tom

On Sat, Aug 5, 2017 at 5:33 PM Klymak Jody <jklymak at uvic.ca > <mailto:jklymak at uvic.ca>> wrote:

    Hi Chris. Thanks so much. That'll be useful

    I think I was partially tricked by the fact that %matplotlib
    notebook wasn't working for master in a Jupiter notebook. but I
    see now that it doesn't wrk for anyone so I guess I was installing
    things adequately :wink:

    Thanks again. Jody

    Sent from my iPhone

    On Aug 5, 2017, at 14:22, Chris Barker <chris.barker at noaa.gov > <mailto:chris.barker at noaa.gov>> wrote:

    This should be pretty straightforward, but MPL's dependencie are
    pretty complex. IN thoery, simplyL

    1) create an environment
    2) install the dev dependencies
    3) build away.

    but in fact, step (2) there is not so straightforward, so here we
    go...

    1) I recommend using conda-forge as a source of packages -- it is
    more up to date than defaults, and you are developing....

    conda config --add channels conda-forge

    2) create an environment for doing your development:

    conda create -n mpl-dev python=3

    3) activate that environment:

    source activate mpl-dev

    4) install the requirements of mpl:

    OK -- this one is kinda messy for MPL. It has a lot of
    requirements that depend someone on which sub-packages you are
    going to build.

    but first you need pk-config, which MPL used to find/configure
    stuff on *nix systems.

    (you may have this from Brew already)

    conda install pkg-config

    python setup.py --requires doesn't work, as mpl does a lot of
    ative configuration.

    but:

    python ./setup.py dry-run

    will get you a good list:

    REQUIRED DEPENDENCIES AND EXTENSIONS
                     numpy: yes [not found. pip may install it below.]
                       six: yes [six was not found.pip will attempt to
    install
                            it after matplotlib.]
                  dateutil: yes [dateutil was not found. It is
    required for date
                            axis support. pip/easy_install may attempt to
                            install it after matplotlib.]
    backports.functools_lru_cache: yes [Not required]
              subprocess32: yes [Not required]
                      pytz: yes [pytz was not found. pip/easy_install may
                            attempt to install it after matplotlib.]
                    cycler: yes [cycler was not found.
    pip/easy_install may
                            attempt to install it after matplotlib.]
                   tornado: yes [tornado was not found. It is required
    for the
                            WebAgg backend. pip/easy_install may
    attempt to
                            install it after matplotlib.]
                 pyparsing: yes [pyparsing was not found. It is
    required for
                            mathtext support. pip/easy_install may
    attempt to
                            install it after matplotlib.]
                    libagg: yes [pkg-config information for 'libagg'
    could not
                            be found. Using local copy.]
                  freetype: no [The C/C++ header for freetype2
    (ft2build.h)
                            could not be found. You may need to
    install the
                            development package.]
                       png: yes [version 1.6.26]
                     qhull: yes [pkg-config information for 'libqhull'
    could not
                            be found. Using local copy.]

    you don't want pip to try to install anything, so I created a
    requirements file (enclosed)

    conda install --file conda_requirements_dev.txt

    And now you should be able to build!

    python setup.py build

    Note that you won't get all the back-ends -- other dependencies
    need to be installed for that.

    BTW: it would be nice to have something like that
    conda_requirements_dev.txt in the MPL repo -- the setup-tools
    stuff is way to tied into the build/packaging/installing system.

    HTH,

    -CHB

    On Tue, Jun 13, 2017 at 6:24 AM, Jody Klymak <jklymak at gmail.com >> <mailto:jklymak at gmail.com>> wrote:

        Hi all,

        I?m somewhat stymied trying to understand how to install
        matplotlib in a development environment using conda.

        I have MacOS, and I have brew gcc etc. I know how to set up a
        env in conda.

        I eventually want to be able to run the tests, so that I can
        stop uploading things with PEP8 errors etc.

        Sorry if this is too vague. I can start over again and send
        specific errors if that is easier, but I would bet someone has
        a step-by-step.

        Thanks, Jody

        _______________________________________________
        Matplotlib-devel mailing list
        Matplotlib-devel at python.org <mailto:Matplotlib-devel at python.org>
        Matplotlib-devel Info Page

    --

    Christopher Barker, Ph.D.
    Oceanographer

    Emergency Response Division
    NOAA/NOS/OR&R (206) 526-6959 <tel:%28206%29%20526-6959> voice
    7600 Sand Point Way NE (206) 526-6329 <tel:%28206%29%20526-6329> fax
    Seattle, WA 98115 (206) 526-6317 <tel:%28206%29%20526-6317>
    main reception

    Chris.Barker at noaa.gov <mailto:Chris.Barker at noaa.gov>
    <conda_requirements_dev.txt>
    _______________________________________________
    Matplotlib-devel mailing list
    Matplotlib-devel at python.org <mailto:Matplotlib-devel at python.org>
    Matplotlib-devel Info Page

    _______________________________________________
    Matplotlib-devel mailing list
    Matplotlib-devel at python.org <mailto:Matplotlib-devel at python.org>
    Matplotlib-devel Info Page

_______________________________________________
Matplotlib-devel mailing list
Matplotlib-devel at python.org
Matplotlib-devel Info Page

That's what I do, also. For the installation from source I now use either
"pip install ." or "pip install -e .".

-e for development for sure. But pip will try to bring in missing
dependencies for you, which is less than ideal if you don't want a
conda-pip jumble.

I think pip -e has a --no-deps flag, or something like that, which is
useful.

···

On 2017/08/05 1:27 PM, Thomas Caswell wrote:

I sometimes take a blunter approach, install Matplotlib via conda and then
uninstall it which leaves behind the dependencies :wink:

D-uh! I should have thought of that!

That may not get you all the build deps but it will be close.

Oh, and taking a look at the Vonda recipe would be a better way to get the
deps list:

https://github.com/conda-forge/matplotlib-feedstock/blob/master/recipe/meta.yaml

-CHB

Tom

On Sat, Aug 5, 2017 at 5:33 PM Klymak Jody <jklymak at uvic.ca < mailto:jklymak at uvic.ca <jklymak at uvic.ca>>> wrote:

   Hi Chris. Thanks so much. That'll be useful

   I think I was partially tricked by the fact that %matplotlib

   notebook wasn't working for master in a Jupiter notebook. but I

   see now that it doesn't wrk for anyone so I guess I was installing

   things adequately :wink:

   Thanks again. Jody

   Sent from my iPhone

   On Aug 5, 2017, at 14:22, Chris Barker <chris.barker at noaa.gov <mailto:chris.barker at noaa.gov <chris.barker at noaa.gov>>> wrote:

   This should be pretty straightforward, but MPL's dependencie are

   pretty complex. IN thoery, simplyL

   1) create an environment

   2) install the dev dependencies

   3) build away.

   but in fact, step (2) there is not so straightforward, so here we

   go...

   1) I recommend using conda-forge as a source of packages -- it is

   more up to date than defaults, and you are developing....

   conda config --add channels conda-forge

   2) create an environment for doing your development:

   conda create -n mpl-dev python=3

   3) activate that environment:

   source activate mpl-dev

   4) install the requirements of mpl:

   OK -- this one is kinda messy for MPL. It has a lot of

   requirements that depend someone on which sub-packages you are

   going to build.

   but first you need pk-config, which MPL used to find/configure

   stuff on *nix systems.

   (you may have this from Brew already)

   conda install pkg-config

   python setup.py --requires doesn't work, as mpl does a lot of

   ative configuration.

   but:

   python ./setup.py dry-run

   will get you a good list:

   REQUIRED DEPENDENCIES AND EXTENSIONS

                    numpy: yes [not found. pip may install it below.]

                      six: yes [six was not found.pip will attempt to

   install

                           it after matplotlib.]

                 dateutil: yes [dateutil was not found. It is

   required for date

                           axis support. pip/easy_install may attempt to

                           install it after matplotlib.]

   backports.functools_lru_cache: yes [Not required]

             subprocess32: yes [Not required]

                     pytz: yes [pytz was not found. pip/easy_install may

                           attempt to install it after matplotlib.]

                   cycler: yes [cycler was not found.

   pip/easy_install may

                           attempt to install it after matplotlib.]

                  tornado: yes [tornado was not found. It is required

   for the

                           WebAgg backend. pip/easy_install may

   attempt to

                           install it after matplotlib.]

                pyparsing: yes [pyparsing was not found. It is

   required for

                           mathtext support. pip/easy_install may

   attempt to

                           install it after matplotlib.]

                   libagg: yes [pkg-config information for 'libagg'

   could not

                           be found. Using local copy.]

                 freetype: no [The C/C++ header for freetype2

   (ft2build.h)

                           could not be found. You may need to

   install the

                           development package.]

                      png: yes [version 1.6.26]

                    qhull: yes [pkg-config information for 'libqhull'

   could not

                           be found. Using local copy.]

   you don't want pip to try to install anything, so I created a

   requirements file (enclosed)

   conda install --file conda_requirements_dev.txt

   And now you should be able to build!

   python setup.py build

   Note that you won't get all the back-ends -- other dependencies

   need to be installed for that.

   BTW: it would be nice to have something like that

   conda_requirements_dev.txt in the MPL repo -- the setup-tools

   stuff is way to tied into the build/packaging/installing system.

   HTH,

   -CHB

   On Tue, Jun 13, 2017 at 6:24 AM, Jody Klymak <jklymak at gmail.com <mailto:jklymak at gmail.com <jklymak at gmail.com>>> wrote:

       Hi all,

       I?m somewhat stymied trying to understand how to install

       matplotlib in a development environment using conda.

       I have MacOS, and I have brew gcc etc. I know how to set up a

       env in conda.

       I eventually want to be able to run the tests, so that I can

       stop uploading things with PEP8 errors etc.

       Sorry if this is too vague. I can start over again and send

       specific errors if that is easier, but I would bet someone has

       a step-by-step.

       Thanks, Jody

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   --

   Christopher Barker, Ph.D.

   Oceanographer

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<%28206%29%20526-6959>> voice

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<%28206%29%20526-6329>> fax

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<%28206%29%20526-6317>> main reception

   Chris.Barker at noaa.gov <mailto:Chris.Barker at noaa.gov
<Chris.Barker at noaa.gov>>

   <conda_requirements_dev.txt>

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Agreed, but using the conda install, conda uninstall method to get the
dependencies, I haven't run into the problem of pip rudely installing
things without asking.

Eric

···

On 2017/08/06 10:18 AM, Chris Barker - NOAA Federal wrote:

But pip will try to bring in missing dependencies for you, which is less
than ideal if you don't want a conda-pip jumble.

exactly -- you need to conda install everything needed first. Properly
built conda packages will have the proper meta-data so that pip knows it's
installed.

-CHB

···

On Sun, Aug 6, 2017 at 9:54 PM, Eric Firing <efiring at hawaii.edu> wrote:

On 2017/08/06 10:18 AM, Chris Barker - NOAA Federal wrote:

But pip will try to bring in missing dependencies for you, which is less
than ideal if you don't want a conda-pip jumble.

Agreed, but using the conda install, conda uninstall method to get the
dependencies, I haven't run into the problem of pip rudely installing
things without asking.

--

Christopher Barker, Ph.D.
Oceanographer

Emergency Response Division
NOAA/NOS/OR&R (206) 526-6959 voice
7600 Sand Point Way NE (206) 526-6329 fax
Seattle, WA 98115 (206) 526-6317 main reception

Chris.Barker at noaa.gov
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