mkpg on OSX

_Russell_E_Owen4 · August 3, 2009, 7:58pm

In article
<88e473830908011043u47782cf3qa37376e3caa1717c@...150...>,

I tried testing the OSX binaries I built Friday on my local OSX laptop
today, and had a problem with the mkpg installer

http://drop.io/xortel1/asset/matplotlib-0-99-0-rc1-py2-5-macosx10-5-zip

On the sage box I used to do the builds, the default python path that
the installer picks up is

  /Library/Python/2.5/site-packages

and this is where it put mpl when I ran the installer on my local box.
But then when I try and import matplotlib on my local box w/o
modifying the PYTHONPATH, I can't find it because my local python is
looking in

  /Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-package
  s/

Is one of these two locations preferable for the default? Is there a
way to inform bdist_mkpg of the desired install target? Is there any
notion of the right way to do things w/ python on OSX?

I just tried the 0.99.0 installation myself and ran into the same issue.
I expected it to work with my python.org python, which would be the
latter path, but instead it went into /Library/Python/2.5/site-packages
(where my normal python.org python can't find it).

If you are using bdist_mpkg then it should do the right thing as long as
you build the python with your python.org python
(/Library/Frameworks...) instead of the system python.

-- Russell

···

John Hunter <jdh2358@...149...> wrote:

_John_Hunter · August 5, 2009, 3:09am

Following some of the suggestions in this thread and on the sf bug report

https://sourceforge.net/tracker/index.php?func=detail&aid=2831805&group_id=80706&atid=560720

I rebuilt the OSX binaries from scratch, using a src framework build
of python, and activetcl as suggested by Russell. The rc2 build
candidates are at

http://drop.io/xortel1#

If anyone has a chance to test them, that would be great.

JDH

···

On Mon, Aug 3, 2009 at 2:58 PM, Russell E. Owen<rowen@...748...> wrote:

If you are using bdist_mpkg then it should do the right thing as long as
you build the python with your python.org python
(/Library/Frameworks...) instead of the system python.

_Russell_E_Owen1 · August 5, 2009, 4:04am

Thank you very much. Unfortunately it doesn't work for me. Trying to import pylab results in a bus error (I appended the log in case it has anything useful in it).

My configuration:
- Intel Mac
- MacOS X 10.5.7
- Python 2.5.2 (in /Library/Frameworks... from python.org)
- Tcl/Tk 8.4.19 (in /Library/Frameworks... from ActiveState)
- this occurs with or without a ~/.matplotlib/matplotlibrc file (that uses TkAgg) and with or without a ~/.matplotlib directory at all
I have confirmed that Tkinter works fine.

I'll see if I can build a binary, though perhaps I should first try using a conventional recipe, then if that works, compare it to the makefile.

-- Russell

Process: Python [2293]
Path: /Library/Frameworks/Python.framework/Versions/2.5/Resources/Python.app/Contents/MacOS/Python
Identifier: Python
Version: ??? (???)
Code Type: X86 (Native)
Parent Process: bash [2260]

Interval Since Last Report: 346695 sec
Crashes Since Last Report: 8
Per-App Interval Since Last Report: 0 sec
Per-App Crashes Since Last Report: 4

Date/Time: 2009-08-04 20:58:49.631 -0700
OS Version: Mac OS X 10.5.7 (9J61)
Report Version: 6
Anonymous UUID: 683AF09F-7779-4567-A264-ACBF18B9AB0B

Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000000
Crashed Thread: 0

Thread 0 Crashed:
0 ??? 1 org.python.python 2 org.python.python 3 org.python.python 4 org.python.python 5 org.python.python 6 org.python.python 7 org.python.python 8 org.python.python 9 org.python.python 10 org.python.python 11 org.python.python 12 org.python.python 13 org.python.python 14 org.python.python 15 org.python.python 16 org.python.python 17 org.python.python 18 org.python.python 19 org.python.python 20 org.python.python 21 org.python.python 22 org.python.python 23 org.python.python 24 org.python.python 25 org.python.python 26 org.python.python 27 org.python.python 28 org.python.python 29 org.python.python 30 org.python.python 31 org.python.python 32 org.python.python 33 org.python.python 34 org.python.python 35 org.python.python 36 org.python.python 37 org.python.python 38 org.python.python 39 org.python.python 40 org.python.python 41 org.python.python 42 org.python.python 43 org.python.python 44 org.python.python 45 org.python.python 46 org.python.python 47 org.python.python 48 org.python.python 49 org.python.python 50 org.python.python 51 org.python.python 52 org.python.python 53 org.python.python 54 org.python.python 55 org.python.python 56 org.python.python 57 org.python.python 58 org.python.python 59 org.python.python 60 org.python.python 61 org.python.python 62 org.python.python 63 org.python.python 64 org.python.python 65 org.python.python 66 org.python.python 67 org.python.python 68 org.python.python 69 org.python.python 70 org.python.python 71 org.python.python 72 org.python.python 73 org.python.python 74 org.python.python 75 org.python.python 76 org.python.python 77 org.python.python 78 org.python.python 0000000000 0 + 0
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0x00484e0e PyEval_EvalCodeEx + 1819 (ceval.c:2836)
0x00484fc2 PyEval_EvalCode + 87 (ceval.c:500)
0x0049be36 PyImport_ExecCodeModuleEx + 193 (import.c:675)
0x0049c28c load_source_module + 726 (import.c:959)
0x0049cf13 import_submodule + 293 (import.c:2400)
0x0049d4be ensure_fromlist + 448 (import.c:2311)
0x0049d893 import_module_level + 787 (import.c:2038)
0x0049db05 PyImport_ImportModuleLevel + 45 (import.c:2072)
0x00478917 builtin___import__ + 156 (bltinmodule.c:49)
0x003f8b00 PyObject_Call + 45 (abstract.c:1861)
0x0047d6fe PyEval_CallObjectWithKeywords + 112 (ceval.c:3442)
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0x00484e0e PyEval_EvalCodeEx + 1819 (ceval.c:2836)
0x00484fc2 PyEval_EvalCode + 87 (ceval.c:500)
0x0049be36 PyImport_ExecCodeModuleEx + 193 (import.c:675)
0x0049c28c load_source_module + 726 (import.c:959)
0x0049cf13 import_submodule + 293 (import.c:2400)
0x0049d161 load_next + 195 (import.c:2220)
0x0049d655 import_module_level + 213 (import.c:2008)
0x0049db05 PyImport_ImportModuleLevel + 45 (import.c:2072)
0x00478917 builtin___import__ + 156 (bltinmodule.c:49)
0x003f8b00 PyObject_Call + 45 (abstract.c:1861)
0x0047d6fe PyEval_CallObjectWithKeywords + 112 (ceval.c:3442)
0x004806e6 PyEval_EvalFrameEx + 8542 (ceval.c:2067)
0x00484e0e PyEval_EvalCodeEx + 1819 (ceval.c:2836)
0x00484fc2 PyEval_EvalCode + 87 (ceval.c:500)
0x0049be36 PyImport_ExecCodeModuleEx + 193 (import.c:675)
0x0049c28c load_source_module + 726 (import.c:959)
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0x0049d60e import_module_level + 142 (import.c:2001)
0x0049db05 PyImport_ImportModuleLevel + 45 (import.c:2072)
0x00478917 builtin___import__ + 156 (bltinmodule.c:49)
0x003f8b00 PyObject_Call + 45 (abstract.c:1861)
0x0047d6fe PyEval_CallObjectWithKeywords + 112 (ceval.c:3442)
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0x00484e0e PyEval_EvalCodeEx + 1819 (ceval.c:2836)
0x00484fc2 PyEval_EvalCode + 87 (ceval.c:500)
0x004a7f62 PyRun_InteractiveOneFlags + 460 (pythonrun.c:1273)
0x004a819e PyRun_InteractiveLoopFlags + 85 (pythonrun.c:725)
0x004a8947 PyRun_AnyFileExFlags + 155 (pythonrun.c:692)
0x004b5e2e Py_Main + 3077 (main.c:523)
0x00001f8e 0x1000 + 3982
0x00001eb5 0x1000 + 3765

Thread 0 crashed with X86 Thread State (32-bit):
   eax: 0x00ca4020 ebx: 0x018123b4 ecx: 0x010e7e00 edx: 0x00011ad0
   edi: 0x00bb4ef0 esi: 0x00011ad0 ebp: 0xbfff8bd8 esp: 0xbfff8bac
    ss: 0x0000001f efl: 0x00010246 eip: 0x00000000 cs: 0x00000017
    ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
   cr2: 0x00000000

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0x91f8a000 - 0x9206afff libobjc.A.dylib ??? (???) <bba0c22add60c7724e259ab28de8953e> /usr/lib/libobjc.A.dylib
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0x93d4a000 - 0x93e15fff com.apple.ColorSync 4.5.1 (4.5.1) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSync.framework/Versions/A/ColorSync
0x93e16000 - 0x93e2bffb com.apple.ImageCapture 5.0.2 (5.0.2) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x93e36000 - 0x941f4fea libLAPACK.dylib ??? (???) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
0x941f5000 - 0x943c6ffb com.apple.security 5.0.5 (36371) <c13e0bb1acfdcf94be4d3ee118ef190e> /System/Library/Frameworks/Security.framework/Versions/A/Security
0x943c7000 - 0x943e2ffb libPng.dylib ??? (???) <e92ab921713f1c28bc639d68683b8ee3> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib
0x943e3000 - 0x943e3fff com.apple.Carbon 136 (136) <98a5e3bc0c4fa44bbb09713bb88707fe> /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x94427000 - 0x9444bfff libxslt.1.dylib ??? (???) <ec4c269815bab8e7211cb8fe9df3a9a3> /usr/lib/libxslt.1.dylib
0x944bd000 - 0x944bdffa com.apple.CoreServices 32 (32) <2fcc8f3bd5bbfc000b476cad8e6a3dd2> /System/Library/Frameworks/CoreServices.framework/Versions/A/CoreServices
0x944be000 - 0x944d6fff com.apple.openscripting 1.2.8 (???) <54ab21172b8b3caa601dde44872a9c0d> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting
0x9457b000 - 0x945f8fef libvMisc.dylib ??? (???) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib
0x945f9000 - 0x945fffff com.apple.print.framework.Print 218.0.3 (220.2) <5b7f4ef7c2df36aff9605377775781e4> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
0x94600000 - 0x9462dfeb libvDSP.dylib ??? (???) <e89461ed03200fb3c0304e62e14a42ed> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvDSP.dylib
0x9462e000 - 0x946b8fe3 com.apple.DesktopServices 1.4.8 (1.4.8) <3065de6531ce839c7cb5b6dd70e03f4f> /System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/DesktopServicesPriv
0x94a86000 - 0x94b36fff edu.mit.Kerberos 6.0.13 (6.0.13) <804bd1b3f08fb57396781f012006367c> /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos
0x94b37000 - 0x94b44fe7 com.apple.opengl 1.5.10 (1.5.10) <5a2813f80c9441170cc1ab8a3dac5038> /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x94b78000 - 0x94cb1ff7 libicucore.A.dylib ??? (???) <cac059ebdac7d9a63ee0f7a648c9f6cf> /usr/lib/libicucore.A.dylib
0x94e77000 - 0x94e7efe9 libgcc_s.1.dylib ??? (???) <f53c808e87d1184c0f9df63aef53ce0b> /usr/lib/libgcc_s.1.dylib
0x94e7f000 - 0x9528ffef libBLAS.dylib ??? (???) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
0x955d6000 - 0x958defff com.apple.HIToolbox 1.5.5 (???) <b17766e3d8800a73f534c41f624f5ac4> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox
0x958df000 - 0x95a25ff7 com.apple.ImageIO.framework 2.0.4 (2.0.4) <c0d51a3b27fe6977d8db45c84c7ff46b> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/ImageIO
0x95a26000 - 0x95a26ff8 com.apple.ApplicationServices 34 (34) <8f910fa65f01d401ad8d04cc933cf887> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices
0x95a27000 - 0x95a37ffc com.apple.LangAnalysis 1.6.4 (1.6.4) <5c122260176a6bcd9da8c7f8bb567b34> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis
0x95a38000 - 0x95a42feb com.apple.audio.SoundManager 3.9.2 (3.9.2) <0f2ba6e891d3761212cf5a5e6134d683> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CarbonSound.framework/Versions/A/CarbonSound
0x95a43000 - 0x95a46fff com.apple.help 1.1 (36) <b507b08e484cb89033e9cf23062d77de> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Help.framework/Versions/A/Help
0x95a7a000 - 0x95b41ff2 com.apple.vImage 3.0 (3.0) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage
0x95ba4000 - 0x95ba4ffb com.apple.installserver.framework 1.0 (8) /System/Library/PrivateFrameworks/InstallServer.framework/Versions/A/InstallServer
0x95bd5000 - 0x95bdafff com.apple.CommonPanels 1.2.4 (85) <ea0665f57cd267609466ed8b2b20e893> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels
0x95bdb000 - 0x95c58feb com.apple.audio.CoreAudio 3.1.2 (3.1.2) <5a4e6329f8dbca5dcd70924525afd24a> /System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio
0x95c59000 - 0x95d00feb com.apple.QD 3.11.56 (???) <a94d0f5438b730e88e5efdb233295c52> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/QD.framework/Versions/A/QD
0x95d57000 - 0x95d96fef libTIFF.dylib ??? (???) <1b5ab7f4bb5251ce1488dd0b1e21ad39> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.dylib
0x95d9c000 - 0x95e4effb libcrypto.0.9.7.dylib ??? (???) <9d714c92872a93dd127ea8556b2c8945> /usr/lib/libcrypto.0.9.7.dylib
0x95e4f000 - 0x95e8dfff libGLImage.dylib ??? (???) <a6425aeb77f4da13212ac75df57b056d> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x95e8e000 - 0x95ebdfe3 com.apple.AE 402.3 (402.3) <b13bfda0ad9314922ee37c0d018d7de9> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE
0x95ebe000 - 0x95f18ff7 com.apple.CoreText 2.0.4 (???) <f0b6c1d4f40bd21505097f0255abfead> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreText.framework/Versions/A/CoreText
0x95f19000 - 0x95fa0ff7 libsqlite3.0.dylib ??? (???) <3334ea5af7a911637413334154bb4100> /usr/lib/libsqlite3.0.dylib
0x95fa1000 - 0x95fb7fff com.apple.DictionaryServices 1.0.0 (1.0.0) <ad0aa0252e3323d182e17f50defe56fc> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/DictionaryServices.framework/Versions/A/DictionaryServices
0x95fb8000 - 0x96292ff3 com.apple.CoreServices.CarbonCore 786.11 (786.13) <9e2d85d52e5e2951aa4dd53c48ccc52f> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore
0x962a0000 - 0x962f9ff7 libGLU.dylib ??? (???) <a3b9be30100a25a6cd3ad109892f52b7> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x96302000 - 0x96309ffe libbsm.dylib ??? (???) <d25c63378a5029648ffd4b4669be31bf> /usr/lib/libbsm.dylib
0x96c03000 - 0x96c11ffd libz.1.dylib ??? (???) <5ddd8539ae2ebfd8e7cc1c57525385c7> /usr/lib/libz.1.dylib
0x96c64000 - 0x97135fbe libGLProgrammability.dylib ??? (???) <7f18294a7bd0b6afe4319f29187fc70d> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x9713c000 - 0x9715afff libresolv.9.dylib ??? (???) <36c871d5da9b49bb5bcf0449833d1dc5> /usr/lib/libresolv.9.dylib
0x9715b000 - 0x9715dfff com.apple.securityhi 3.0 (30817) <2b2854123fed609d1820d2779e2e0963> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
0x974d0000 - 0x974d0ffd com.apple.vecLib 3.4.2 (vecLib 3.4.2) /System/Library/Frameworks/vecLib.framework/Versions/A/vecLib
0xfffe8000 - 0xfffebfff libobjc.A.dylib ??? (???) /usr/lib/libobjc.A.dylib
0xffff0000 - 0xffff1780 libSystem.B.dylib ??? (???) /usr/lib/libSystem.B.dylib

···

On Aug 4, 2009, at 8:09 PM, John Hunter wrote:

On Mon, Aug 3, 2009 at 2:58 PM, Russell E. Owen<rowen@...748...> wrote:

If you are using bdist_mpkg then it should do the right thing as long as
you build the python with your python.org python
(/Library/Frameworks...) instead of the system python.

Following some of the suggestions in this thread and on the sf bug report

https://sourceforge.net/tracker/index.php?func=detail&aid=2831805&group_id=80706&atid=560720

I rebuilt the OSX binaries from scratch, using a src framework build
of python, and activetcl as suggested by Russell. The rc2 build
candidates are at

http://drop.io/xortel1#

If anyone has a chance to test them, that would be great.

_John_Hunter · August 5, 2009, 10:27am

Thank you very much. Unfortunately it doesn't work for me. Trying to import
pylab results in a bus error (I appended the log in case it has anything
useful in it).

My configuration:
- Intel Mac
- MacOS X 10.5.7
- Python 2.5.2 (in /Library/Frameworks... from python.org)
- Tcl/Tk 8.4.19 (in /Library/Frameworks... from ActiveState)
- this occurs with or without a ~/.matplotlib/matplotlibrc file (that uses
TkAgg) and with or without a ~/.matplotlib directory at all
I have confirmed that Tkinter works fine.\

Can you create a small test script that creates an mpl figure and
saves it with savefig, and run it with

> python myscript.py -dTkAgg

> python myscript.py -dWXAgg

> python myscript.py -dAgg

> python myscript.py -dmacosx

and let me know if all segfault, and if not, which ones do?

JDH

···

On Tue, Aug 4, 2009 at 11:04 PM, Russell Owen<rowen@...270...> wrote:

_Russell_E_Owen4 · August 5, 2009, 3:53pm

The segfault I reported on was on home computer. Today at work I tried the same installer and it works fine on my work machine. I performed the tests (though I doubt they’re relevant since TkAgg works) and came up with:

python myscript.py -dTkAgg

works (at work)

python myscript.py -dWXAgg

I don’t have wxPython installed so it fails as expected.

python myscript.py -dAgg

Works but I have no idea where the output goes.

python myscript.py -dmacosx

Works.

I can try more tests at home, but not until this evening. My guess based on past experience with matplotlib segfaults in TkAgg is that all those tests will pass except TkAgg, and that TkAgg will work if I move my /Library/Frameworks Tcl/Tk aside.

– Russell

···

On Aug 5, 2009, at 3:27 AM, John Hunter wrote:

On Tue, Aug 4, 2009 at 11:04 PM, Russell Owen<rowen@…270…> wrote:

Thank you very much. Unfortunately it doesn’t work for me. Trying to import
pylab results in a bus error (I appended the log in case it has anything
useful in it).

My configuration:

Intel Mac

MacOS X 10.5.7

Python 2.5.2 (in /Library/Frameworks… from python.org)

Tcl/Tk 8.4.19 (in /Library/Frameworks… from ActiveState)

this occurs with or without a ~/.matplotlib/matplotlibrc file (that uses
TkAgg) and with or without a ~/.matplotlib directory at all
I have confirmed that Tkinter works fine.\

Can you create a small test script that creates an mpl figure and
saves it with savefig, and run it with

python myscript.py -dTkAgg

python myscript.py -dWXAgg

python myscript.py -dAgg

python myscript.py -dmacosx

and let me know if all segfault, and if not, which ones do?

JDH

_John_Hunter · August 5, 2009, 4:00pm

If you made a call to savefig('somefile'), this will create somefile.png

···

On Wed, Aug 5, 2009 at 10:53 AM, Russell Owen<rowen@...748...> wrote:

The segfault I reported on was on home computer. Today at work I tried the
same installer and it works fine on my work machine. I performed the tests
(though I doubt they're relevant since TkAgg works) and came up with:

I don't have wxPython installed so it fails as expected.

python myscript.py -dAgg