installing basemap

Hi again,
So I removed everything and started again ( with version 1-0-2 :slight_smile: )
but am still having trouble, GEOS_DIR seems to be set correctly but I
get the following error when trying to make the GEOS library with,

sudo make; make install

make[3]: Entering directory `/home/davcra/basemap-1.0.2/geos-3.3.1/src'
test -z "/home/davcra/lib" || /bin/mkdir -p "/home/davcra/lib"
/bin/sh ../libtool --mode=install /usr/bin/install -c libgeos.la
'/home/davcra/lib'
libtool: install: /usr/bin/install -c .libs/libgeos-3.3.1.so
/home/davcra/lib/libgeos-3.3.1.so
libtool: install: (cd /home/davcra/lib && { ln -s -f libgeos-3.3.1.so
libgeos.so || { rm -f libgeos.so && ln -s libgeos-3.3.1.so libgeos.so;
}; })
libtool: install: /usr/bin/install -c .libs/libgeos.lai
/home/davcra/lib/libgeos.la
libtool: install: /usr/bin/install -c .libs/libgeos.a /home/davcra/lib/libgeos.a
libtool: install: chmod 644 /home/davcra/lib/libgeos.a
libtool: install: ranlib /home/davcra/lib/libgeos.a
libtool: finish:
PATH="/usr/ncl_files/bin:/usr/ncl_files/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/davcra/.local/bin:/home/davcra/bin:/sbin"
ldconfig -n /home/davcra/lib

路路路

----------------------------------------------------------------------
Libraries have been installed in:
聽聽聽/home/davcra/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
聽聽聽- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
聽聽聽聽聽during execution
聽聽聽- add LIBDIR to the `LD_RUN_PATH' environment variable
聽聽聽聽聽during linking
聽聽聽- use the `-Wl,-rpath -Wl,LIBDIR' linker flag
聽聽聽- have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/home/davcra/basemap-1.0.2/geos-3.3.1/src'
make[2]: Leaving directory `/home/davcra/basemap-1.0.2/geos-3.3.1/src'
make[1]: Leaving directory `/home/davcra/basemap-1.0.2/geos-3.3.1/src'
Making install in capi
make[1]: Entering directory `/home/davcra/basemap-1.0.2/geos-3.3.1/capi'
make[2]: Entering directory `/home/davcra/basemap-1.0.2/geos-3.3.1/capi'
test -z "/home/davcra/lib" || /bin/mkdir -p "/home/davcra/lib"
/bin/sh ../libtool --mode=install /usr/bin/install -c
libgeos_c.la '/home/davcra/lib'
libtool: install: warning: relinking `libgeos_c.la'
libtool: install: (cd /home/davcra/basemap-1.0.2/geos-3.3.1/capi;
/bin/sh /home/davcra/basemap-1.0.2/geos-3.3.1/libtool --tag CXX
--mode=relink g++ -DGEOS_INLINE -pedantic -Wall -ansi -Wno-long-long
-ffloat-store -g -O2 -version-info 8:1:7 -no-undefined -o libgeos_c.la
-rpath /home/davcra/lib libgeos_c_la-geos_c.lo
libgeos_c_la-geos_ts_c.lo ../src/libgeos.la )
mv: cannot move `libgeos_c.so.1.7.1' to `libgeos_c.so.1.7.1U': Permission denied
libtool: install: error: relink `libgeos_c.la' with the above command
before installing it
make[2]: *** [install-libLTLIBRARIES] Error 1
make[2]: Leaving directory `/home/davcra/basemap-1.0.2/geos-3.3.1/capi'
make[1]: *** [install-am] Error 2
make[1]: Leaving directory `/home/davcra/basemap-1.0.2/geos-3.3.1/capi'
make: *** [install-recursive] Error 1

any ideas??
thanks
D

On 3/31/12 5:48 AM, David Craig wrote:

Hi, I previously installed basemap by using the yum command. This
installed version 0.99.4. I want to install the latest version so I
can use shaded relief etc. This may be more of a linux problem but as
I am more familiar with python than linux I thought someone here may
be able to help.
Following the website instructions
(http://matplotlib.github.com/basemap/users/installing.html) I
downloaded the latest version and untarred it. Then in the basemap
directory (which contains geos-3.2.0) I try to set the environment
variable GEOS_DIR to point to the location of libgeos_c and geos_c.h.
I use the find command to locate the files,
/find / -name geos_c.h/ returns the location of that file as
//usr/lib/basemap-1.0.1/geos-3.2.0/capi/geos_c.h/
and
/find / -name libgeos*/
returns
//libgeos_c_la-geos_c.Plo
/usr/lib/libgeos-3.3.1.so <http://libgeos-3.3.1.so>
/usr/lib/libgeos_c.so.1.7.1
/usr/lib/libgeos_c.so.1/
so I set GEOS_DIR to /usr/lib (not sure if this is correct).
I then cd to the basemap directory and run,
python setup.py install
[davcra@...83... basemap-1.0.1]$ sudo python setup.py install
[sudo] password for davcra:
checking for GEOS lib in /root ....
checking for GEOS lib in /usr ....
checking for GEOS lib in /usr/local ....
checking for GEOS lib in /sw ....
checking for GEOS lib in /opt ....
checking for GEOS lib in /opt/local ....

Can't find geos library . Please set the
environment variable GEOS_DIR to point to the location
where geos is installed (for example, if geos_c.h
is in /usr/local/include, and libgeos_c is in /usr/local/lib,
set GEOS_DIR to /usr/local), or edit the setup.py script
manually and set the variable GEOS_dir (right after the line
that says "set GEOS_dir manually here".
The problem seems to be with GEOS_DIR but I am not sure what I should
set it to.
Thanks
D

David:

The basemap setup.py is assuming that the geos library is installed in
<GEOS_DIR>/lib, and geos_c.h in <GEOS_DIR>/include. You should set
GEOS_DIR to the directory you specified with --prefix when you ran
configure for geos 3.2.0 (I think the default is /usr/local). However,
it looks like you have a redhat installed geos library in /usr/lib
(seems like it is version 3.3.1). You probably could just install the
-dev package (which would put the include file in /usr/include), and
the basemap setup.py would autodetect it.

Also, the latest version of basemap is 1.0.2, not 1.0.1.

-Jeff

Hi again,
So I removed everything and started again ( with version 1-0-2 :slight_smile: )
but am still having trouble, GEOS_DIR seems to be set correctly but I
get the following error when trying to make the GEOS library with,

sudo make; make install

make[3]: Entering directory `/home/davcra/basemap-1.0.2/geos-3.3.1/src'
test -z "/home/davcra/lib" || /bin/mkdir -p "/home/davcra/lib"
聽聽/bin/sh ../libtool --mode=install /usr/bin/install -c libgeos.la
'/home/davcra/lib'
libtool: install: /usr/bin/install -c .libs/libgeos-3.3.1.so
/home/davcra/lib/libgeos-3.3.1.so
libtool: install: (cd /home/davcra/lib&& { ln -s -f libgeos-3.3.1.so
libgeos.so || { rm -f libgeos.so&& ln -s libgeos-3.3.1.so libgeos.so;
}; })
libtool: install: /usr/bin/install -c .libs/libgeos.lai
/home/davcra/lib/libgeos.la
libtool: install: /usr/bin/install -c .libs/libgeos.a /home/davcra/lib/libgeos.a
libtool: install: chmod 644 /home/davcra/lib/libgeos.a
libtool: install: ranlib /home/davcra/lib/libgeos.a
libtool: finish:
PATH="/usr/ncl_files/bin:/usr/ncl_files/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/davcra/.local/bin:/home/davcra/bin:/sbin"
ldconfig -n /home/davcra/lib
----------------------------------------------------------------------
Libraries have been installed in:
聽聽聽聽/home/davcra/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
聽聽聽聽- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
聽聽聽聽聽聽during execution
聽聽聽聽- add LIBDIR to the `LD_RUN_PATH' environment variable
聽聽聽聽聽聽during linking
聽聽聽聽- use the `-Wl,-rpath -Wl,LIBDIR' linker flag
聽聽聽聽- have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/home/davcra/basemap-1.0.2/geos-3.3.1/src'
make[2]: Leaving directory `/home/davcra/basemap-1.0.2/geos-3.3.1/src'
make[1]: Leaving directory `/home/davcra/basemap-1.0.2/geos-3.3.1/src'
Making install in capi
make[1]: Entering directory `/home/davcra/basemap-1.0.2/geos-3.3.1/capi'
make[2]: Entering directory `/home/davcra/basemap-1.0.2/geos-3.3.1/capi'
test -z "/home/davcra/lib" || /bin/mkdir -p "/home/davcra/lib"
聽聽/bin/sh ../libtool --mode=install /usr/bin/install -c
libgeos_c.la '/home/davcra/lib'
libtool: install: warning: relinking `libgeos_c.la'
libtool: install: (cd /home/davcra/basemap-1.0.2/geos-3.3.1/capi;
/bin/sh /home/davcra/basemap-1.0.2/geos-3.3.1/libtool --tag CXX
--mode=relink g++ -DGEOS_INLINE -pedantic -Wall -ansi -Wno-long-long
-ffloat-store -g -O2 -version-info 8:1:7 -no-undefined -o libgeos_c.la
-rpath /home/davcra/lib libgeos_c_la-geos_c.lo
libgeos_c_la-geos_ts_c.lo ../src/libgeos.la )
mv: cannot move `libgeos_c.so.1.7.1' to `libgeos_c.so.1.7.1U': Permission denied
libtool: install: error: relink `libgeos_c.la' with the above command
before installing it
make[2]: *** [install-libLTLIBRARIES] Error 1
make[2]: Leaving directory `/home/davcra/basemap-1.0.2/geos-3.3.1/capi'
make[1]: *** [install-am] Error 2
make[1]: Leaving directory `/home/davcra/basemap-1.0.2/geos-3.3.1/capi'
make: *** [install-recursive] Error 1

any ideas??
thanks
D

David: Seems like a permissions problem?

Any reason you're not using the libgeos yum package?

-Jeff

路路路

On 4/3/12 3:09 AM, David Craig wrote:

On 3/31/12 5:48 AM, David Craig wrote:

Hi, I previously installed basemap by using the yum command. This
installed version 0.99.4. I want to install the latest version so I
can use shaded relief etc. This may be more of a linux problem but as
I am more familiar with python than linux I thought someone here may
be able to help.
Following the website instructions
(http://matplotlib.github.com/basemap/users/installing.html) I
downloaded the latest version and untarred it. Then in the basemap
directory (which contains geos-3.2.0) I try to set the environment
variable GEOS_DIR to point to the location of libgeos_c and geos_c.h.
I use the find command to locate the files,
/find / -name geos_c.h/ returns the location of that file as
//usr/lib/basemap-1.0.1/geos-3.2.0/capi/geos_c.h/
and
/find / -name libgeos*/
returns
//libgeos_c_la-geos_c.Plo
/usr/lib/libgeos-3.3.1.so<http://libgeos-3.3.1.so>
/usr/lib/libgeos_c.so.1.7.1
/usr/lib/libgeos_c.so.1/
so I set GEOS_DIR to /usr/lib (not sure if this is correct).
I then cd to the basemap directory and run,
python setup.py install
[davcra@...83... basemap-1.0.1]$ sudo python setup.py install
[sudo] password for davcra:
checking for GEOS lib in /root ....
checking for GEOS lib in /usr ....
checking for GEOS lib in /usr/local ....
checking for GEOS lib in /sw ....
checking for GEOS lib in /opt ....
checking for GEOS lib in /opt/local ....

Can't find geos library . Please set the
environment variable GEOS_DIR to point to the location
where geos is installed (for example, if geos_c.h
is in /usr/local/include, and libgeos_c is in /usr/local/lib,
set GEOS_DIR to /usr/local), or edit the setup.py script
manually and set the variable GEOS_dir (right after the line
that says "set GEOS_dir manually here".
The problem seems to be with GEOS_DIR but I am not sure what I should
set it to.
Thanks
D

David:

The basemap setup.py is assuming that the geos library is installed in
<GEOS_DIR>/lib, and geos_c.h in<GEOS_DIR>/include. You should set
GEOS_DIR to the directory you specified with --prefix when you ran
configure for geos 3.2.0 (I think the default is /usr/local). However,
it looks like you have a redhat installed geos library in /usr/lib
(seems like it is version 3.3.1). You probably could just install the
-dev package (which would put the include file in /usr/include), and
the basemap setup.py would autodetect it.

Also, the latest version of basemap is 1.0.2, not 1.0.1.

-Jeff

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