Bus error on import - Mac OS X (10.5.8) Matplotlib 1.0.0

_Ghose_Kaushik · December 7, 2010, 12:39am

Hi Guys,

I did a search on the mailing list but could not come up with a solution, so I am crying "Uncle" and writing.

I installed matplotlib 1.0.0 from the package on SF (http://sourceforge.net/projects/matplotlib/files/matplotlib/matplotlib-1.0/matplotlib-1.0.0-python.org-py2.6-macosx10.4.dmg/download)

I assumed that 10.4 would work on my 10.5 - perhaps that is where I went wrong?

I installed it and got, satisfactorily:

import matplotlib
matplotlib.__version__
---> '1.0.0'

But when I do

import pylab

I get a bus error that throws me out of ipython.

The trace is given below

If anyone can direct me towards the right direction, I would be vary happy!

Thanks
-Kaushik

Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000000
Crashed Thread: 0

Thread 0 Crashed:
0 ??? 0000000000 0 + 0
1 org.python.python 0x002b32f7 _PyImport_LoadDynamicModule + 167
2 org.python.python 0x002b0c83 load_module + 227
3 org.python.python 0x002b11ad import_submodule + 301
4 org.python.python 0x002b1409 load_next + 201
5 org.python.python 0x002b1e03 PyImport_ImportModuleLevel + 419
6 org.python.python 0x0028ab5f builtin___import__ + 159
7 org.python.python 0x001e4d35 PyObject_Call + 85
8 org.python.python 0x002905be PyEval_CallObjectWithKeywords + 78
9 org.python.python 0x00293b50 PyEval_EvalFrameEx + 9680
10 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
11 org.python.python 0x002983f7 PyEval_EvalCode + 87
12 org.python.python 0x002af8ec PyImport_ExecCodeModuleEx + 188
13 org.python.python 0x002b058c load_source_module + 540
14 org.python.python 0x002b11ad import_submodule + 301
15 org.python.python 0x002b1409 load_next + 201
16 org.python.python 0x002b1db1 PyImport_ImportModuleLevel + 337
17 org.python.python 0x0028ab5f builtin___import__ + 159
18 org.python.python 0x001e4d35 PyObject_Call + 85
19 org.python.python 0x002905be PyEval_CallObjectWithKeywords + 78
20 org.python.python 0x00293b50 PyEval_EvalFrameEx + 9680
21 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
22 org.python.python 0x002983f7 PyEval_EvalCode + 87
23 org.python.python 0x002af8ec PyImport_ExecCodeModuleEx + 188
24 org.python.python 0x002b058c load_source_module + 540
25 org.python.python 0x002b11ad import_submodule + 301
26 org.python.python 0x002b1757 ensure_fromlist + 439
27 org.python.python 0x002b21ed PyImport_ImportModuleLevel + 1421
28 org.python.python 0x0028ab5f builtin___import__ + 159
29 org.python.python 0x001e4d35 PyObject_Call + 85
30 org.python.python 0x002905be PyEval_CallObjectWithKeywords + 78
31 org.python.python 0x00293b50 PyEval_EvalFrameEx + 9680
32 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
33 org.python.python 0x002983f7 PyEval_EvalCode + 87
34 org.python.python 0x002af8ec PyImport_ExecCodeModuleEx + 188
35 org.python.python 0x002b058c load_source_module + 540
36 org.python.python 0x002b11ad import_submodule + 301
37 org.python.python 0x002b1757 ensure_fromlist + 439
38 org.python.python 0x002b21ed PyImport_ImportModuleLevel + 1421
39 org.python.python 0x0028ab5f builtin___import__ + 159
40 org.python.python 0x001e4d35 PyObject_Call + 85
41 org.python.python 0x002905be PyEval_CallObjectWithKeywords + 78
42 org.python.python 0x00293b50 PyEval_EvalFrameEx + 9680
43 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
44 org.python.python 0x002983f7 PyEval_EvalCode + 87
45 org.python.python 0x002af8ec PyImport_ExecCodeModuleEx + 188
46 org.python.python 0x002b058c load_source_module + 540
47 org.python.python 0x002b11ad import_submodule + 301
48 org.python.python 0x002b1409 load_next + 201
49 org.python.python 0x002b1e03 PyImport_ImportModuleLevel + 419
50 org.python.python 0x0028ab5f builtin___import__ + 159
51 org.python.python 0x001e4d35 PyObject_Call + 85
52 org.python.python 0x002905be PyEval_CallObjectWithKeywords + 78
53 org.python.python 0x00293b50 PyEval_EvalFrameEx + 9680
54 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
55 org.python.python 0x002983f7 PyEval_EvalCode + 87
56 org.python.python 0x002af8ec PyImport_ExecCodeModuleEx + 188
57 org.python.python 0x002b058c load_source_module + 540
58 org.python.python 0x002b11ad import_submodule + 301
59 org.python.python 0x002b1409 load_next + 201
60 org.python.python 0x002b1db1 PyImport_ImportModuleLevel + 337
61 org.python.python 0x0028ab5f builtin___import__ + 159
62 org.python.python 0x001e4d35 PyObject_Call + 85
63 org.python.python 0x002905be PyEval_CallObjectWithKeywords + 78
64 org.python.python 0x00293b50 PyEval_EvalFrameEx + 9680
65 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
66 org.python.python 0x00296a25 PyEval_EvalFrameEx + 21669
67 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
68 org.python.python 0x0029634c PyEval_EvalFrameEx + 19916
69 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
70 org.python.python 0x0029634c PyEval_EvalFrameEx + 19916
71 org.python.python 0x00296ae6 PyEval_EvalFrameEx + 21862
72 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
73 org.python.python 0x0029634c PyEval_EvalFrameEx + 19916
74 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
75 org.python.python 0x0029634c PyEval_EvalFrameEx + 19916
76 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
77 org.python.python 0x0029634c PyEval_EvalFrameEx + 19916
78 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
79 org.python.python 0x0029634c PyEval_EvalFrameEx + 19916
80 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
81 org.python.python 0x002983f7 PyEval_EvalCode + 87
82 org.python.python 0x002bcf08 PyRun_FileExFlags + 168
83 org.python.python 0x002bddf3 PyRun_SimpleFileExFlags + 867
84 org.python.python 0x002cf902 Py_Main + 3122
85 org.python.python 0x00001f82 0x1000 + 3970
86 org.python.python 0x00001ea9 0x1000 + 3753

Thread 0 crashed with X86 Thread State (32-bit):
   eax: 0x01570020 ebx: 0x0185798b ecx: 0x009fde00 edx: 0x01570020
   edi: 0x013e7930 esi: 0x013ce368 ebp: 0xbfff76a8 esp: 0xbfff766c
    ss: 0x0000001f efl: 0x00010246 eip: 0x00000000 cs: 0x00000017
    ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
   cr2: 0x00000000

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Friedrich_Romstedt1 · December 7, 2010, 9:44am

2010/12/7 Kaushik Ghose <Kaushik_Ghose@...2126...>:

I did a search on the mailing list but could not come up with a solution, so I
am crying "Uncle" and writing.

I installed matplotlib 1.0.0 from the package on SF
(matplotlib - Browse Files at SourceForge.net)

I assumed that 10.4 would work on my 10.5 - perhaps that is where I went wrong?

Normally it should work, the 10.4 is the least recent version where it
is supposed to work.

I installed it and got, satisfactorily:

import matplotlib
matplotlib.__version__
---> '1.0.0'

But when I do

import pylab

I get a bus error that throws me out of ipython.

Two suggestions (just covering incompletely that I have no real idea atm):

1) Try to import it from CPython (meaning $python -c "import pylab"
or $python CR >>> import pylab). Might be that ipython is the
culprit.

2) Try >>> import matplotlib.pylab instead. When your pylab module
may come from somewhere else than the mpl module you're importing.

You didn't have matplotlib installed before, or have made some other
notable changes to your system?

What Python distro do you use?

Friedrich

Friedrich_Romstedt1 · November 12, 2011, 7:08pm

2010/12/7 Kaushik Ghose <Kaushik_Ghose@...2126...>:

Hi Guys,

I did a search on the mailing list but could not come up with a solution, so I
am crying "Uncle" and writing.

I installed matplotlib 1.0.0 from the package on SF
(matplotlib - Browse Files at SourceForge.net)

I assumed that 10.4 would work on my 10.5 - perhaps that is where I went wrong?

I installed it and got, satisfactorily:

import matplotlib
matplotlib.__version__
---> '1.0.0'

But when I do

import pylab

I get a bus error that throws me out of ipython.

The trace is given below

If anyone can direct me towards the right direction, I would be vary happy!

Thanks
-Kaushik

Any progress since then? Did the installer by Russell work? I'm
writing to you because the date is approx. Dec 2010, and I just ran
into an issue which is related to this date and a font file installed
that time. Does your matplotlib work now?

Friedrich

Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000000
Crashed Thread: 0

Thread 0 Crashed:
0 ??? 0000000000 0 + 0
1 org.python.python 0x002b32f7 _PyImport_LoadDynamicModule + 167
2 org.python.python 0x002b0c83 load_module + 227
3 org.python.python 0x002b11ad import_submodule + 301
4 org.python.python 0x002b1409 load_next + 201
5 org.python.python 0x002b1e03 PyImport_ImportModuleLevel + 419
6 org.python.python 0x0028ab5f builtin___import__ + 159
7 org.python.python 0x001e4d35 PyObject_Call + 85
8 org.python.python 0x002905be PyEval_CallObjectWithKeywords + 78
9 org.python.python 0x00293b50 PyEval_EvalFrameEx + 9680
10 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
11 org.python.python 0x002983f7 PyEval_EvalCode + 87
12 org.python.python 0x002af8ec PyImport_ExecCodeModuleEx + 188
13 org.python.python 0x002b058c load_source_module + 540
14 org.python.python 0x002b11ad import_submodule + 301
15 org.python.python 0x002b1409 load_next + 201
16 org.python.python 0x002b1db1 PyImport_ImportModuleLevel + 337
17 org.python.python 0x0028ab5f builtin___import__ + 159
18 org.python.python 0x001e4d35 PyObject_Call + 85
19 org.python.python 0x002905be PyEval_CallObjectWithKeywords + 78
20 org.python.python 0x00293b50 PyEval_EvalFrameEx + 9680
21 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
22 org.python.python 0x002983f7 PyEval_EvalCode + 87
23 org.python.python 0x002af8ec PyImport_ExecCodeModuleEx + 188
24 org.python.python 0x002b058c load_source_module + 540
25 org.python.python 0x002b11ad import_submodule + 301
26 org.python.python 0x002b1757 ensure_fromlist + 439
27 org.python.python 0x002b21ed PyImport_ImportModuleLevel + 1421
28 org.python.python 0x0028ab5f builtin___import__ + 159
29 org.python.python 0x001e4d35 PyObject_Call + 85
30 org.python.python 0x002905be PyEval_CallObjectWithKeywords + 78
31 org.python.python 0x00293b50 PyEval_EvalFrameEx + 9680
32 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
33 org.python.python 0x002983f7 PyEval_EvalCode + 87
34 org.python.python 0x002af8ec PyImport_ExecCodeModuleEx + 188
35 org.python.python 0x002b058c load_source_module + 540
36 org.python.python 0x002b11ad import_submodule + 301
37 org.python.python 0x002b1757 ensure_fromlist + 439
38 org.python.python 0x002b21ed PyImport_ImportModuleLevel + 1421
39 org.python.python 0x0028ab5f builtin___import__ + 159
40 org.python.python 0x001e4d35 PyObject_Call + 85
41 org.python.python 0x002905be PyEval_CallObjectWithKeywords + 78
42 org.python.python 0x00293b50 PyEval_EvalFrameEx + 9680
43 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
44 org.python.python 0x002983f7 PyEval_EvalCode + 87
45 org.python.python 0x002af8ec PyImport_ExecCodeModuleEx + 188
46 org.python.python 0x002b058c load_source_module + 540
47 org.python.python 0x002b11ad import_submodule + 301
48 org.python.python 0x002b1409 load_next + 201
49 org.python.python 0x002b1e03 PyImport_ImportModuleLevel + 419
50 org.python.python 0x0028ab5f builtin___import__ + 159
51 org.python.python 0x001e4d35 PyObject_Call + 85
52 org.python.python 0x002905be PyEval_CallObjectWithKeywords + 78
53 org.python.python 0x00293b50 PyEval_EvalFrameEx + 9680
54 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
55 org.python.python 0x002983f7 PyEval_EvalCode + 87
56 org.python.python 0x002af8ec PyImport_ExecCodeModuleEx + 188
57 org.python.python 0x002b058c load_source_module + 540
58 org.python.python 0x002b11ad import_submodule + 301
59 org.python.python 0x002b1409 load_next + 201
60 org.python.python 0x002b1db1 PyImport_ImportModuleLevel + 337
61 org.python.python 0x0028ab5f builtin___import__ + 159
62 org.python.python 0x001e4d35 PyObject_Call + 85
63 org.python.python 0x002905be PyEval_CallObjectWithKeywords + 78
64 org.python.python 0x00293b50 PyEval_EvalFrameEx + 9680
65 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
66 org.python.python 0x00296a25 PyEval_EvalFrameEx + 21669
67 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
68 org.python.python 0x0029634c PyEval_EvalFrameEx + 19916
69 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
70 org.python.python 0x0029634c PyEval_EvalFrameEx + 19916
71 org.python.python 0x00296ae6 PyEval_EvalFrameEx + 21862
72 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
73 org.python.python 0x0029634c PyEval_EvalFrameEx + 19916
74 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
75 org.python.python 0x0029634c PyEval_EvalFrameEx + 19916
76 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
77 org.python.python 0x0029634c PyEval_EvalFrameEx + 19916
78 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
79 org.python.python 0x0029634c PyEval_EvalFrameEx + 19916
80 org.python.python 0x002982dd PyEval_EvalCodeEx + 2109
81 org.python.python 0x002983f7 PyEval_EvalCode + 87
82 org.python.python 0x002bcf08 PyRun_FileExFlags + 168
83 org.python.python 0x002bddf3 PyRun_SimpleFileExFlags + 867
84 org.python.python 0x002cf902 Py_Main + 3122
85 org.python.python 0x00001f82 0x1000 + 3970
86 org.python.python 0x00001ea9 0x1000 + 3753

Thread 0 crashed with X86 Thread State (32-bit):
eax: 0x01570020 ebx: 0x0185798b ecx: 0x009fde00 edx: 0x01570020
edi: 0x013e7930 esi: 0x013ce368 ebp: 0xbfff76a8 esp: 0xbfff766c
ss: 0x0000001f efl: 0x00010246 eip: 0x00000000 cs: 0x00000017
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
cr2: 0x00000000

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/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x95bc1000 - 0x95c73ffb libcrypto.0.9.7.dylib ??? (???)
<d02f7e5b8a68813bb7a77f5edb34ff9d> /usr/lib/libcrypto.0.9.7.dylib
0x95c74000 - 0x95c76fff com.apple.securityhi 3.0 (30817)
<020419ad33b8638b174e1a472728a894>
/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
0x95c77000 - 0x95e48ff3 com.apple.security 5.0.6 (37592)
<0b25e1e4cc34431630f01edb3fdf54d1>
/System/Library/Frameworks/Security.framework/Versions/A/Security
0x95e49000 - 0x95e56fe7 com.apple.opengl 1.5.10 (1.5.10)
<5a2813f80c9441170cc1ab8a3dac5038>
/System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x960f9000 - 0x96124fe7 libauto.dylib ??? (???)
<2072d673706bbe463ed2426af57a28d7> /usr/lib/libauto.dylib
0x96125000 - 0x96135fff com.apple.speech.synthesis.framework 3.7.1 (3.7.1)
<06d8fc0307314f8ffc16f206ad3dbf44>
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis
0x96136000 - 0x96139fff com.apple.help 1.1 (36)
<175489f8adf287b3ebd259362b0292c0>
/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Help.framework/Versions/A/Help
0x96163000 - 0x9643dff3 com.apple.CoreServices.CarbonCore 786.16 (786.16)
<60b518e4ad02b91826240199a6311286>
/System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore
0x9643e000 - 0x96480fef com.apple.NavigationServices 3.5.2 (163)
<91844980804067b07a0b6124310d3f31>
/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/NavigationServices.framework/Versions/A/NavigationServices
0x96481000 - 0x96508ff7 libsqlite3.0.dylib ??? (???)
<3334ea5af7a911637413334154bb4100> /usr/lib/libsqlite3.0.dylib
0x96509000 - 0x969dafbe libGLProgrammability.dylib ??? (???)
<7f18294a7bd0b6afe4319f29187fc70d>
/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x969db000 - 0x96a68ff7 com.apple.LaunchServices 292 (292)
<a41286c7c1eb20ffd5cc796f791070f0>
/System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices
0x96bee000 - 0x96bf2fff libGIF.dylib ??? (???)
<36f7b0255a81d97c7b360c3b11b4e462>
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.dylib
0x96bf3000 - 0x97293fef com.apple.CoreGraphics 1.409.7 (???)
<7b65edcce394f39b6a1954d5e30bc34c>
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics
0x97294000 - 0x97631fef com.apple.QuartzCore 1.5.8 (1.5.8)
<a28fa54346a9f9d5b3bef076a1ee0fcf>
/System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore
0x97632000 - 0x976edfe3 com.apple.CoreServices.OSServices 228.1 (228.1)
<76fdc146b4d9937f9c5cbaa1512e0023>
/System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices
0x9787e000 - 0x978bcfff libGLImage.dylib ??? (???)
<a6425aeb77f4da13212ac75df57b056d>
/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x97dcd000 - 0x97ddbffd libz.1.dylib ??? (???)
<545ca09467025f77131cfac09d8b9375> /usr/lib/libz.1.dylib
0x97ddc000 - 0x97e6fff3 com.apple.ApplicationServices.ATS 3.8 (???)
<e61b0945da6ab368348a927f7428ad67>
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS
0xfffe8000 - 0xfffebfff libobjc.A.dylib ??? (???) /usr/lib/libobjc.A.dylib
0xffff0000 - 0xffff1780 libSystem.B.dylib ??? (???) /usr/lib/libSystem.B.dylib

Michael,

at the risk of spamming you, I'm putting you in. I think better one
traceback too much than one too less.

FYI. You're getting the email anyway. The bt looks different than
the one I sent before. Seems the debug symbols from libfreetype are
either missing or it is some in general different problem?

Friedrich